bp_oligo_count1p
Oligo count and frequency
Usage
Usage: bp_oligo_count
[-h/--help]
[-l/--length
OLIGOLENGTH]
[-f/--format
SEQFORMAT]
[-i/--in/-s/--sequence
SEQFILE]
[-o/--out
OUTFILE]
Overview
This scripts counts occurrence and frequency for all oligonucleotides of given length.
It can be used to determine what primers are useful for frequent priming of nucleic acid for random labeling.
Note that this script could be run by utilizing the compseq program which is part of EMBOSS.
Options
The default sequence format is fasta. If no outfile is given, the results will be printed to standard out. All other options can entered interactively.
Feedback
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
[email protected] - General discussionhttp://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issuesAUTHOR - Charles C. Kim
Email [email protected]
Releases
9 releases since Debian 5.0 (Lenny); the text changed 7 times.