bp_mrtrans1p
Implement a transformer of alignments from protein to mrna coordinates
Usage
Usage:
bp_mrtrans -i
inputfile
-o
outputfile
[-if
input
format]
[-of
output
format]
[-s
cDNA
sequence
database]
[-sf
cDNA
sequence
format]
[-h]
Overview
This script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans.
The options are:
-o filename - the output filename [default STDOUT]-of format - output sequence format(multiple sequence alignment)[default phylip]-i filename - the input filename [required]-if format - input sequence format(multiple sequence alignment)[ default clustalw]-s --seqdb filename - the cDNA sequence database file-sf --seqformat - the cDNA seq db format (flatfile sequence format)-h - this help menu
Releases
9 releases since Debian 5.0 (Lenny); the text changed 7 times.