bp_generate_histogram(1p)

bp_generate_histogram1p

Usage

bp_generate_histogram.pl -d gadfly variation gene:curated

Overview

Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.

Options

The following options are recognized:

  Option        Description
  ------        -----------
   --dsn        <dsn>       Data source (default dbi:mysql:test)
   --adaptor    <adaptor>   Schema adaptor (default dbi::mysqlopt)
   --user       <user>      Username for mysql authentication
   --pass       <password>  Password for mysql authentication
   --aggregator <list>      Comma-separated list of aggregators

Releases

9 releases since Debian 5.0 (Lenny); the text changed 6 times.

  1. 5.0
  2. 6.0
  3. 7
  4. 8
  5. 9
  6. 10
  7. 11–13

Bugs

Please report them.

Author

Lincoln Stein <[email protected]>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

From libbio-db-gff-perl 1.7.4-1 in Debian 13 (Trixie). Parsed by carta from the page's man source.