bolt(1) on Linux
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Efficient large cohorts genome-wide Bayesian mixed-model association testing
Flags it lists
-
--LDscoresFile -
--bed -
--bfile -
--bfilegz -
--bgenFile -
--bgenSampleFileList -
--bim -
--covarCol -
--covarFile -
--covarUseMissingIndic -
--dosage2FileList -
--dosageFidIidFile -
--dosageFile -
--exclude -
--fam -
--geneticMapFile -
--helpFull -
--impute2FidIidFile -
--impute2FileList -
--lmm -
--lmmForceNonInf -
--lmmInfOnly -
--modelSnps -
--phenoCol -
--phenoFile -
--phenoUseFam -
--qCovarCol -
--reml -
--remove -
--sampleFile -
--statsFile -
--statsFileBgenSnps -
--statsFileDosage2Snps -
--statsFileDosageSnps -
--statsFileImpute2Snps