bed2bed_display1
Convert bed file to bed format suitable for displaying chip-seq peaks.
Usage
bed2bed_display {[options]
[-a
<min
BED
score>]
[-b
<max
BED
score>]
[<]
<BED
file | stdin>}
Overview
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- version 1.5.5 where options are: |
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Produce Debug information |
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Show this Help text |
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Set Feature name <ft> |
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Set output Format (1:BED[Def] 2:BedGraph) |
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--name <name> -
Set name for track name field [def. name=SGA-feature]
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--desc <desc> -
Set track description field [def. desc="ChIP-Seq Custom data"]
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--color <col> -
Define the track color in comma-separated RGB values [def. 100,100,100]
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--autoscale -
<on|off> Data viewing paramenter: set auto-scale to UCSC data view [def=OFF]
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--always0 -
<on|off> Data viewing paramenter: always include zero [def=OFF]
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--wfunction -
<func> Data viewing paramenter: windowing function [def=mean+whiskers|maximum|mean|minimum]
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--smoothing -
<grade> Data viewing paramenter: smoothing window [def=OFF[0], <grade>=0,2..16]
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--visibility <mode> -
Display mode: [def=dense|full|hide] or [def=1|2|3]
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Convert BED file to BED format suitable for displaying ChIP-seq peaks. Two formats are supported: 1) BED Track with Score field; 2) BedGraph. For BED track format, only the graphical parameter 'visibility' can be set.
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).