beagle_cpu_EigenDecompositionSquare3
Usage
Inherits beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >.
Public Member Functions
EigenDecompositionSquare (int decompositionCount, int stateCount, int categoryCount, long flags)
virtual void setEigenDecomposition (int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues)
virtual void updateTransitionMatrices (int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count)
Protected Attributes
REALTYPE ** gEMatrices
REALTYPE ** gIMatrices
bool isComplex
int kEigenValuesSize