barrnap1
Rapid ribosomal rna prediction
Usage
barrnap [options]
<chromosomes.fasta>
Overview
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
Options
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--help -
This help
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--version -
Print version and exit
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--citation -
Print citation for referencing barrnap
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--kingdom [X] -
Kingdom: mito bac arc euk (default 'bac')
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--quiet -
No screen output (default OFF)
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--threads [N] -
Number of threads/cores/CPUs to use (default '8')
--lencutoff [n.n] Proportional length threshold to label as partial (default '0.8')
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--reject [n.n] -
Proportional length threshold to reject prediction (default '0.5')
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--evalue [n.n] -
Similarity e-value cut-off (default '1e-09')
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--incseq -
Include FASTA input sequences in GFF3 output (default OFF)
Releases
Unchanged in 5 releases since Debian 9 (Stretch).