bamcleanheader.py1
Remove illegal and malformed fields from a bam file's header
Usage
bamcleanheader.py [-h]
[-S]
[input
[input ...]]
Overview
remove illegal and malformed fields from a BAM file's header
Options
positional arguments:
- input
-
SAM/BAM file to inject header lines into. If '-' or absent then defaults to stdin.
optional arguments:
-
-h, --help -
show this help message and exit
-
-S, --is_sam -
input is SAM
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).