bam2starch_gnuParallel(1)

bam2starch_gnuParallel1

Manual page for bam2starch_gnuparallel 2.4.41+dfsg

Usage

bam2starch_gnuParallel [--help] [--clean] <input-indexed-bam-file> [output-starch-file]

Overview

: Pass in the name of an indexed BAM file to create a Starch file using GNU Parallel.

: (stdin isn't supported through this wrapper script.)

: Add --clean to remove <input-indexed-bam-file> after starching it up.

: You can pass in the name of the output Starch archive to be created. Otherwise, the output will have the same name as the input file, with an additional

'.bed' ending.: If the input file ends with '.bam', that will be stripped off.