bam2hints(1) on Linux
The text ca6bf2871fcb, as Debian 9 (Stretch) shipped it.
convert mRNA-to-genome alignments in BAM format into a hint file for AUGUSTUS
Flags it lists
-
--MinEndBlockLen -
--ep_cutoff -
--maxQgaplen -
--maxcoverage -
--maxgaplen -
--maxgenelen -
--maxintronlen -
--minintronlen -
--priority -
--score -
--source