bali-phy(1) on Linux
The text 3c66ffc693af, as Debian 10 (Buster) shipped it.
Bayesian Alignment and Phylogeny estimation using MCMC
Flags it lists
-
--alphabet -
--branch-lengths -
--config -
--help -
--imodel -
--iterations -
--link -
--name -
--scale -
--seed -
--smodel -
--subsample -
--test -
--tree -
--unalign -
--verbose -
--version -
-A -
-B -
-I -
-L -
-R -
-S -
-T -
-U -
-V -
-c -
-h -
-i -
-n -
-s -
-t -
-v -
-x