arden-analyze1
Analyze the results of the artificial reference genome mapping
Usage
arden-analyze [options]
[INPUT
FILE]
[OUTPUTFOLDER] ...
Overview
Script to analyze the results of the artificial reference genome mapping. This script identifies the putative TPs / FPs on a specific data set (reads).
Options
OUTPUTFOLDER
|
path to output destination folder. |
|---|---|
INPUT FILE
|
ppath to ini file. To get the required format have a look at the example files. |
-
--version -
show program's version number and exit
-
-h, --help -
show this help message and exit
-
-p PHRED, --phred=PHRED -
Specify the PHRED encoding of the input reads i.e. Illumina 1.3+ =
-p33.[default: 33]
-
-r RANK, --internalrank=RANK -
Use internal ranking for reads (needed if the read names cannot be lexicographically be sorted in the same way in python and your OS by sam tools).[default:1]
Releases
Unchanged in 6 releases since Debian 8 (Jessie).