alignments-diff(1)

Usage

alignments-diff alignment-file1 alignment-file2 [OPTIONS]

Align two alignments for comparison.

`–merge`	Stack the two alignments into one alignment with duplicate names
`–dual`	Write out the two aligned alignments separately
`–fill arg (=gap)`	blank columns filled with: gap or unknown
`-d arg, –differences-file arg`	Filename to store differences in AU format
`–blocksize arg (=20)`	Width of blocks of same color
`–classes arg (=1)`	Number of groups for non-matching characters

BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .

Please send bug reports to ⟨[email protected]⟩\c .

4 releases since Debian 10 (Buster); the text changed 2 times.