alignment-translate(1)

Usage

alignment-translate [OPTIONS] < sequence-file [OPTIONS]

Translate a DNA/RNA alignment into amino acids.

`-h, –help`	Produce help message
`-g arg (=standard), –genetic-code arg (=standard)`	Specify alternate genetic code.
`-f arg (=1), –frame arg (=1)`	Frame 1, 2, 3, -1, -2, or -3
`-r, –reverse`	Just return the reverse
`-c, –complement`	Just return the complement
`-t arg (=yes), –translate arg (=yes)`	Translate the sequences

Translate DNA or RNA to amino acids in reading frame 1:

Give the reverse complement without translation:

The following commands are identical:

: % alignment-translate --frame=-2 < dna.fasta > aa2.fasta % alignment-translate -rc --frame=2 < dna.fasta > aa2.fasta

BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .

Please send bug reports to ⟨[email protected]⟩\c .

4 releases since Debian 10 (Buster); the text changed 2 times.