abiview1e
Display the trace in an abi sequencer file
Usage
abiview -infile
infile
-outseq
seqout
-graph
xygraph
[-startbase
integer]
[-endbase
integer]
-separate
boolean
[-yticks
boolean]
[-sequence
boolean]
[-window
integer]
[-bases
string]
abiview -help
Overview
abiview is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data retrieval:Sequence data,Display" command group(s).
Options
Input section
-
-infile infile
Output section
-
-outseq seqout
-
-graph xygraph
-
-startbase integer
-
-endbase integer -
Last sequence base to report or display. If the default is set to zero then the value of this is taken as the maximum number of bases.
-
-separate boolean -
Default value: N
-
-yticks boolean -
Default value: N
-
-sequence boolean -
Default value: Y
-
-window integer -
Default value: 40
-
-bases string -
Default value: GATC
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.