VFDBgenus1
Extract virulence genes by genus from the vfdb database
Usage
VFDBgenus [-h]
--infile
INFILE
[--genus
GENUS]
Overview
This tool is part of the SRST2 suite.
Extract virulence genes by genus from the VFDB database available at http://www.mgc.ac.cn/VFs/Down/CP_VFs.ffn.gz
Options
optional arguments:
-
-h, --help -
show this help message and exit
-
--infile INFILE -
Raw VFDB sequences file (fasta, e.g. download from http://www.mgc.ac.cn/VFs/Down/CP_VFs.ffn.gz)
-
--genus GENUS -
Genus to extract (if not specified, all genera will be extracted to individual files)
Releases
Unchanged in 5 releases since Debian 9 (Stretch).