VFDB_cdhit_to_csv1
Parse cdhit results
Usage
VFDB_cdhit_to_csv [-h]
--cluster_file
CLUSTER_FILE
--infile
INFILE
--outfile
OUTFILE
Overview
This tool is part of the SRST2 suite.
Output a comma-separated table of alleles, their inferred gene name (from annotation) and their 90% cluster from CD-HIT analysis
Options
optional arguments:
-
-h, --help -
show this help message and exit
-
--cluster_file CLUSTER_FILE -
cd hit output file (.clstr)
-
--infile INFILE -
raw sequences file that was input to cdhit (fasta)
-
--outfile OUTFILE -
output file (csv)
Releases
Unchanged in 5 releases since Debian 9 (Stretch).