TIDDIT.py1
Structural variant calling
Usage
TIDDIT.py [--sv]
[--cov]
Overview
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
Options
-
--sv -
call structural variation
-
--cov -
generate a coverage bed file