R_mds1
Project distance matrix into lower number of dimensions
Usage
R_mds -k
<filtered_kmers.txt>
-p
<pheno_file>
Overview
Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details
Options
Required
-
-d, --dist -
Distance matrix output by kmds
-
-p, --pheno -
Phenotype file used by seer
Optional
-
-o, --output -
Output prefix (default 'all_structure')
-
--pc -
Number of dimensions to project into (default 3)
-
-R -
R executable (default 'which R')
-
-h, --help -
Displays this message
Releases
Unchanged in 5 releases since Debian 9 (Stretch).