QTLtools-ase(1) on Linux
The text 336903a69067, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye) shipped it. The page shows this text now.
Measure ASE from RNA-seq
Flags it lists
-
--auto-flip -
--bam -
--baseq -
--blacklist -
--both-alleles-seen -
--check-proper-pairing -
--cov -
--cov-bias -
--fasta -
--filter-duplicates -
--filter-indel-reads -
--filter-supp -
--filtered -
--fix-chr -
--fix-id -
--geno-prob -
--geno-prob-id -
--group-by -
--gtf -
--ignore-orientation -
--illumina13 -
--imp-qual -
--imp-qual-id -
--ind -
--keep-bans-for-bias -
--keep-discordant-for-bias -
--keep-failed-qc -
--keep-orphan-reads -
--legacy-options -
--mapq -
--max-depth -
--merge-on-the-fly -
--out -
--print-stats -
--pvalue -
--reg -
--sites -
--subsample -
--suppress-warnings -
--vcf -
-A -
-B -
-C -
-D -
-E -
-F -
-G -
-I -
-J -
-L -
-O -
-P -
-Q -
-R -
-S -
-V -
-W -
-X -
-a -
-b -
-c -
-d -
-e -
-f -
-g -
-i -
-j -
-k -
-l -
-m -
-o -
-p -
-q -
-r -
-s -
-t -
-u -
-v -
-x -
-y