ParseDb.py1
Repertoire clonal assignment toolkit (python 3)
Overview
usage: ParseDb.py [--version] [-h] ...
Parses tab delimited database files
help:
-
--version -
show program's version number and exit
-
-h, --help -
show this help message and exit
subcommands:
|
Database operation |
|
add
|
Adds field and value pairs. |
delete
|
Deletes specific records. |
drop
|
Deletes entire fields. |
index
|
Adds a numeric index field. |
rename
|
Renames fields. |
select
|
Selects specific records. |
sort
|
Sorts records by field values. |
update
|
Updates field and value pairs. |
merge
|
Merges files. |
split
|
Splits database files by field values. |
output files:
-
sequences
-
FASTA formatted sequences output from the subcommands fasta and clip.
-
<field>-<value>
-
database files partitioned by annotation <field> and <value>.
-
parse-<command>
-
output of the database modification functions where <command> is one of the subcommands add, index, drop, delete, rename, select, sort or update.
required fields:
-
sequence_id
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).