NanoLyse1
Remove lambda phage reads from a fastq file
Usage
NanoLyse [-h]
[-v]
[-r
REFERENCE]
[--logfile
LOGFILE]
Overview
Remove reads mapping to the lambda genome. Reads fastq from stdin and writes to stdout.
Options
optional arguments:
-
-r, --reference REFERENCE -
Specify a reference fasta file against which to filter.
-
--logfile LOGFILE -
Specify the path and filename for the log file.
General options:
-
-h, --help -
show the help and exit
-
-v, --version -
Print version and exit.
Examples:
-
gunzip
-creads.fastq.gz | NanoLyse | gzip > reads_without_lambda.fastq.gz gunzip-creads.fastq.gz | NanoLyse | NanoFilt-q12 | gzip > filtered_reads_without_lambda.fastq.gz gunzip-creads.fastq.gz | NanoLyse--referencemygenome.fa.gz | gzip > reads_without_mygenome.fastq.gz
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).