ConvertHeaders.py1
Converts sequence headers to the presto format
Overview
usage: ConvertHeaders.py [--version] [-h] ...
Converts sequence headers to the pRESTO format
help:
-
--version -
show program's version number and exit
-
-h, --help -
show this help message and exit
subcommands:
|
Conversion method |
|
generic
|
Converts sequence headers without a known annotation system. |
454
|
Converts Roche 454 sequence headers. |
genbank
|
Converts NCBI GenBank and RefSeq sequence headers. |
illumina
|
Converts Illumina sequence headers. |
imgt
|
Converts sequence headers output by IMGT/GENE-DB. |
migec
|
Converts headers for consensus sequence generated by the MIGEC tool. |
sra
|
Converts NCBI SRA or EMBL-EBI ENA sequence headers. |
output files:
|
convert-pass |
|
|
reads passing header conversion. |
|
|
convert-fail |
|
|
raw reads failing header conversion. |
output annotation fields:
|
<format defined> |
|
|
the annotation fields added are specific to the header format of the input file. |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).