Bio::Tradis3pm
Bio-tradis contains a set of tools to analyse the output from tradis analyses. for more information on the tradis method, see http://genome.cshlp.org/content/19/12/2308
Usage
Bio-Tradis provides functionality to:
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detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags
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add the tags to the reads - Bio::Tradis::AddTagsToSeq
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filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags
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remove tags - Bio::Tradis::RemoveTags
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map to a reference genome - Bio::Tradis::Map
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create an insertion site plot file - Bio::Tradis::TradisPlot
Most of these functions are available as standalone scripts or as perl modules.
Version
version 1.4.5
Copyright and license
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007Releases
3 releases since Debian 11 (Bullseye); the text changed 1 time.