Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL3pm

Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes
use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;

   my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new(
        output_filename => 'core_alignment_header.embl',
        multifasta_files => [
            't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln',
            't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln'
        ],
        gene_lengths => {
            't/data/multifasta_files/1.aln'           => 1,
            't/data/multifasta_files/outof_order.aln' => 10,
            't/data/multifasta_files/2.aln'           => 100,
            't/data/multifasta_files/3.aln'           => 1000
        },
   );
   $obj->create_file;