Bio::Roary::External::Mcl3pm

Wrapper around mcl which takes in blast results and outputs clustered results

Usage

Wrapper around MCL which takes in blast results and outputs clustered results

   use Bio::Roary::External::Mcl;
   
   my $mcl= Bio::Roary::External::Mcl->new(
     blast_results     => 'db',
     mcxdeblast_exec   => 'mcxdeblast',
     mcl_exec          => 'mcl',
     output_file       => 'output.groups'
   );
   
   $mcl->run();

Version

version 3.13.0

Copyright and license

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007

Releases

5 releases since Debian 9 (Stretch); the text changed 3 times.

9
10
11–12
13