Bio::Roary::External::Blastp3pm

Wrapper around ncbis blastp command

Usage

Wrapper around NCBIs blastp command

   use Bio::Roary::External::Blastp;
   
   my $blast_database= Bio::Roary::External::Blastp->new(
     fasta_file => 'contigs.fa',
     blast_database => 'db',
     exec       => 'blastp',
     output_file => 'results.out'
   );
   
   $blast_database->run();

Version

version 3.13.0

Methods

result_file

Returns the path to the results file

Copyright and license

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007

Releases

5 releases since Debian 9 (Stretch); the text changed 3 times.

9
10
11–12
13