Bio::Graphics::Glyph::heterogeneous_segments(3pm)

Usage

  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

Overview

This glyph acts like graded_segments but the bgcolor of each segment (sub-feature) can be individually set using the source field of the feature.

Each segment type color is specified using the following nomenclature:

 -{source}_color => $color

For example, if the feature consists of a gene containing both confirmed and unconfirmed exons, you can make the confirmed exons green and the unconfirmed ones red this way:

  -confirmed_color   => 'green',
  -unconfirmed_color => 'red'

Options

The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.

  Option      Description                      Default
  ------      -----------                      -------
  -fgcolor      Foreground color               black
  -outlinecolor Synonym for -fgcolor
  -bgcolor      Background color               turquoise
  -fillcolor    Synonym for -bgcolor
  -linewidth    Line width                     1
  -height       Height of glyph                10
  -font         Glyph font                     gdSmallFont
  -connector    Connector type                 0 (false)
  -connector_color
                Connector color                black
  -label        Whether to draw a label        0 (false)
  -description  Whether to draw a description  0 (false)
  -hilite       Highlight color                undef (no color)

Releases

9 releases since Debian 5.0 (Lenny); the text changed 6 times.

5.0
6.0
7
8
9
10
11–13