Bio::DB::GFF::Aggregator::match_gap3pm
Usage
-------------------------------------------------Aggregator method: match_gapMain method: matchSub methods: match-------------------------------------------------
Overview
This aggregator is used for GFF3 style gapped alignments, in which there is a single feature of method 'match' with a 'Gap' attribute.
The 'Gap' attribute's format consists of a series of (operartion,length) pairs separated by space characters, for example: 'M8 D3 M6'. (see GFF reference for complete explanation)
This module only recognizes the M and D operators, which should be sufficient for simple nucleotide to nucleotide alignments.
Releases
7 releases since Debian 7 (Wheezy); the text changed 6 times.