AssemblePairs.py1
Assembles paired-end reads into a single sequence
Overview
usage: AssemblePairs.py [--version] [-h] ...
Assembles paired-end reads into a single sequence
help:
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--version -
show program's version number and exit
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-h, --help -
show this help message and exit
subcommands:
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Assembly method
- align
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Assemble pairs by aligning ends.
- join
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Assemble pairs by concatenating ends.
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reference
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Assemble pairs by aligning reads against a reference database.
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sequential
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Assemble pairs by first attempting de novo assembly, then reference guided assembly.
output files:
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assemble-pass |
|
|
successfully assembled reads. |
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assemble-fail |
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raw reads failing paired-end assembly. |
output annotation fields:
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<user defined> |
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annotation fields specified by the |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).