AlignSets.py1
Multiple aligns input sequences by group
Overview
usage: AlignSets.py [--version] [-h] ...
Multiple aligns input sequences by group
help:
-
--version -
show program's version number and exit
-
-h, --help -
show this help message and exit
subcommands:
|
Alignment method |
|
muscle
|
Align sequence sets using muscle. |
offset
|
Align sequence sets using predefined 5' offset. |
table
|
Create a 5' offset table by primer multiple alignment. |
output files:
|
align-pass |
|
|
multiple aligned reads. |
|
|
align-fail |
|
|
raw reads failing multiple alignment. |
|
|
offsets-forward |
|
|
5' offset table for input into offset subcommand. |
|
|
offsets-reverse |
|
|
3' offset table for input into offset subcommand. |
output annotation fields:
-
None
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).