AlignRecords.py1
Repertoire clonal assignment toolkit (python 3)
Overview
usage: AlignRecords.py [--version] [-h] ...
Multiple aligns sequence fields
help:
-
--version -
show program's version number and exit
-
-h, --help -
show this help message and exit
subcommands:
|
alignment method |
|
across
|
Multiple aligns sequence columns within groups and across rows using MUSCLE. |
within
|
Multiple aligns sequence fields within rows using MUSCLE |
block
|
Multiple aligns sequence groups across both columns and rows using MUSCLE. |
output files:
|
align-pass |
|
|
database with multiple aligned sequences. |
|
|
align-fail |
|
|
database with records failing alignment. |
required fields:
|
sequence_id, v_call, j_call <field> |
|
|
user specified sequence fields to align. |
output fields:
-
<field>_align
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).