Algorithm::HMM::Report(3pm)

Usage

  # Search the HMM model.  An Algorithm::HMM::Report object is returned.
  my $rep = $hmm->search("AAIELKBPOWELKQJPASDLKJIGE");
  # Get all the global hits from the report object.
  my @ghits = $rep->global_hits();
  # Get all the domain hits from the report object.
  my @dhits = $rep->domain_hits();

Overview

The Algorithm::HMM::Report object is returned by the Algorithm::HMM search method. It contains the sets of global and domain hits returned by the model.

Methods

  my @ghits = $rep->global_hits();
  my @dhits = $rep->domain_hits();

The global_hits() and domain_hits() methods return lists of Algorithm::HMM::Hit::Global and Algorithm::HMM::Hit::Domain objects respectively. A global hit is a match across the entire model, while a domain hit is a match on a smaller subsequence of the model.

Releases

4 releases since Debian 10 (Buster); the text changed 3 times.

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