Man Pages in mipe

Section 1: Executable programs or shell commands

csv2mipe.1

Generates mipe file based on 3 tab-delimited files

genotype2mipe.1

Inserts snp data into mipe file

mipe06to07.1

Reads a mipe file version 0.6 and prints it in version 0.7

mipe08to09.1

Reads a mipe file version 0.8 and prints it in version 0.9

mipe0_9to1_0.1

Reads a mipe file version 0.9 and prints it in version 1.0

mipe2dbSTS.1

Generates input file for submission to dbsts

mipe2fas.1

Generates fasta file

mipe2genotypes.1

Generates list of genotypes from a mipe file

mipe2html.1

Generates html page based on mipe file

mipe2pcroverview.1

Generates overview of pcrs from a mipe file

mipe2pcrprimers.1

Generates list of pcrprimers from a mipe file

mipe2putativesbeprimers.1

Generates list of putative sbe primers from a mipe file

mipe2sbeprimers.1

Generates list of sbe primers from a mipe file

mipe2snps.1

Generates list of snps from a mipe file

mipeCheckSanity.1

Check sanity of mipe file, focussing on contents (vs 'form', that can be checked using xmllint)

removePcrFromMipe.1

Removes pcr data from mipe file

removeSbeFromMipe.1

Removes sbe data from mipe file

removeSnpFromMipe.1

Removes snp data from mipe file

sbe2mipe.1

Inserts sbe data into mipe file

snp2mipe.1

Inserts snp data into mipe file

snpPosOnDesign.1

Adds pos_design to snp

snpPosOnSource.1

Adds pos_source to snp