Man Pages in macs

Section 1: Executable programs or shell commands

bdgbroadcall.1

Fine-tuning script to call broad peaks from a single bedgraph track for scores

bdgcmp.1

Calculate scores using certain method by comparing a bedgraph file from treatment and a file from control representing local bias

bdgdiff.1

Naive call differential peaks from 4 bedgraph tracks for scores

bdgpeakcall.1

Naive call peaks from a single bedgraph track for scores

filterdup.1

Filter duplicate reads depending on sequencing depth

macs2.1

Model-based analysis for chip-sequencing

macs2diff.1

Differential analysis for chip-sequencing

randsample.1

Random sample certain number/percentage of tags