geo (2rheolef)

Distributed finite element mesh.

template <class T>
class geo_basic<T,sequential> : public smart_pointer_clone<geo_abstract_rep<T,sequential> > {
public:

// typedefs:

    typedef sequential                              memory_type;
    typedef geo_abstract_rep<T,sequential>          rep;
    typedef geo_rep<T,sequential>                   rep_geo_rep;
    typedef smart_pointer_clone<rep>                base;
    typedef typename rep::size_type                 size_type;
    typedef typename rep::node_type                 node_type;
    typedef typename rep::variant_type              variant_type;
    typedef typename rep::reference                 reference;
    typedef typename rep::const_reference           const_reference;
    typedef typename rep::iterator                  iterator;
    typedef typename rep::const_iterator            const_iterator;
    typedef typename rep::iterator_by_variant       iterator_by_variant;
    typedef typename rep::const_iterator_by_variant const_iterator_by_variant;
    typedef typename rep::coordinate_type           coordinate_type;

// allocators:

    geo_basic ();
    geo_basic (std::string name, const communicator& comm = communicator());
    void load (std::string name, const communicator& comm = communicator());
    geo_basic (const domain_indirect_basic<sequential>& dom, const geo_basic<T,sequential>& omega);

    // build from_list (for level set)
    geo_basic (
      const geo_basic<T,sequential>&                      lambda,
      const array<point_basic<T>,sequential>&             node_list,
      const boost::array<array<geo_element_auto<heap_allocator<size_type> >,sequential>,
                         reference_element::max_variant>& elt_list)
    : base (new_macro(rep_geo_rep(lambda,node_list,elt_list))) {}

// accessors:

    std::string                    name() const { return base::data().name(); }
    std::string              familyname() const { return base::data().familyname(); }
    size_type                 dimension() const { return base::data().dimension(); }
    size_type             map_dimension() const { return base::data().map_dimension(); }
    size_type             serial_number() const { return base::data().serial_number(); }
    size_type                   variant() const { return base::data().variant(); }
    coordinate_type   coordinate_system() const { return base::data().coordinate_system(); }
    std::string  coordinate_system_name() const { return space_constant::coordinate_system_name(coordinate_system()); }
    const basis_basic<T>& get_piola_basis() const { return base::data().get_piola_basis(); }
    size_type                     order() const { return base::data().get_piola_basis().degree(); }
    const node_type&               xmin() const { return base::data().xmin(); }
    const node_type&               xmax() const { return base::data().xmax(); }
    const distributor& geo_element_ownership(size_type dim) const { return base::data().geo_element_ownership(dim); }
    const geo_size&      sizes()             const { return base::data().sizes(); }
    const geo_size&  ios_sizes()             const { return base::data().ios_sizes(); }
    const_reference get_geo_element (size_type dim, size_type ige) const { return base::data().get_geo_element (dim, ige); }
          reference get_geo_element (size_type dim, size_type ige)       { return base::data().get_geo_element (dim, ige); }
    const_reference dis_get_geo_element (size_type dim, size_type dis_ige) const
                { return get_geo_element (dim, dis_ige); }
    const geo_element& bgd2dom_geo_element (const geo_element& bgd_K) const { return base::data().bgd2dom_geo_element (bgd_K); }
    const geo_element& dom2bgd_geo_element (const geo_element& dom_K) const { return base::data().dom2bgd_geo_element (dom_K); }
    size_type neighbour (size_type ie, size_type loc_isid) const {
                          return base::data().neighbour (ie, loc_isid); }
    void neighbour_guard() const { base::data().neighbour_guard(); }
    size_type        n_node()   const { return base::data().n_node(); }
    const node_type&     node(size_type     inod) const { return base::data().node(inod); }
    const node_type& dis_node(size_type dis_inod) const { return base::data().dis_node(dis_inod); }
    void dis_inod (const geo_element& K, std::vector<size_type>& dis_inod) const {
                return base::data().dis_inod(K,dis_inod); }
    node_type piola (const geo_element& K, const node_type& hat_x) const { return base::data().piola (K, hat_x); }
    const array<node_type,sequential>& get_nodes() const { return base::data().get_nodes(); }
    size_type dis_inod2dis_iv (size_type dis_inod) const { return base::data().dis_inod2dis_iv(dis_inod); }

    size_type n_domain_indirect () const { return base::data().n_domain_indirect (); }
    bool have_domain_indirect (const std::string& name) const { return base::data().have_domain_indirect (name); }
    const domain_indirect_basic<sequential>& get_domain_indirect (size_type i) const {
          return base::data().get_domain_indirect (i); }
    const domain_indirect_basic<sequential>& get_domain_indirect (const std::string& name) const {
          return base::data().get_domain_indirect (name); }
    void  insert_domain_indirect (const domain_indirect_basic<sequential>& dom) const {
          base::data().insert_domain_indirect (dom); }

    size_type n_domain () const { return base::data().n_domain_indirect (); }
    geo_basic<T,sequential> get_domain (size_type i) const;
    geo_basic<T,sequential> operator[] (const std::string& name) const;
    geo_basic<T,sequential> boundary() const;
    geo_basic<T,sequential> internal_sides() const;
    geo_basic<T,sequential> sides() const;

    size_type seq_locate (
                const point_basic<T>& x,
                size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
                { return base::data().seq_locate (x, dis_ie_guest); }
    size_type dis_locate (
                const point_basic<T>& x,
                size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
                { return base::data().dis_locate (x, dis_ie_guest); }
    void locate (
                const array<point_basic<T>, sequential>& x,
                array<size_type, sequential>& dis_ie) const
                { return base::data().locate (x, dis_ie); }
    size_type seq_trace_move (
                const point_basic<T>&     x,
                const point_basic<T>&     v,
                      point_basic<T>&     y) const
                                        { return base::data().seq_trace_move (x,v,y); }
    size_type dis_trace_move (
                const point_basic<T>&     x,
                const point_basic<T>&     v,
                      point_basic<T>&     y) const
                                        { return base::data().dis_trace_move (x,v,y); }
    void trace_ray_boundary (
                const array<point_basic<T>,sequential>&     x,
                const array<point_basic<T>,sequential>&     v,
                      array<size_type, sequential>&         dis_ie,
                      array<point_basic<T>,sequential>&     y) const
                                        { return base::data().trace_ray_boundary (x,v,dis_ie,y); }
    void trace_move (
                const array<point_basic<T>,sequential>&     x,
                const array<point_basic<T>,sequential>&     v,
                      array<size_type, sequential>&         dis_ie,
                      array<point_basic<T>,sequential>&     y) const
                                        { return base::data().trace_move (x,v,dis_ie,y); }

// modifiers:

    void set_name (std::string name);
    void set_dimension (size_type dim);
    void set_serial_number (size_type i);
    void reset_order (size_type order);
    void set_coordinate_system (coordinate_type sys_coord);
    void set_coordinate_system (std::string sys_coord_name) { set_coordinate_system (space_constant::coordinate_system(sys_coord_name)); }
    void set_nodes (const array<node_type,sequential>& x);
    void build_from_data (
        const geo_header&                                               hdr,
        const array<node_type, sequential>&                             node,
              boost::array<array<geo_element_auto<heap_allocator<size_type> >,sequential, heap_allocator<size_type> >, reference_element::max_variant>&
                                                                        tmp_geo_element,
        bool do_upgrade);

// extended accessors:

    const communicator& comm()        const { return geo_element_ownership (0).comm(); }
    size_type     size(size_type dim) const { return base::data().geo_element_ownership(dim).size(); }
    size_type dis_size(size_type dim) const { return base::data().geo_element_ownership(dim).dis_size(); }
    size_type     size()              const { return size     (map_dimension()); }
    size_type dis_size()              const { return dis_size (map_dimension()); }
    size_type     n_vertex()          const { return size     (0); }
    size_type dis_n_vertex()          const { return dis_size (0); }
    const_reference operator[] (size_type ie) const { return get_geo_element (map_dimension(), ie); }
          reference operator[] (size_type ie)       { return get_geo_element (map_dimension(), ie); }
    const_iterator begin (size_type dim) const { return base::data().begin(dim); }
    const_iterator end   (size_type dim) const { return base::data().end  (dim); }
    const_iterator begin ()              const { return begin(map_dimension()); }
    const_iterator end   ()              const { return end  (map_dimension()); }

    const_iterator_by_variant begin_by_variant (variant_type variant) const
        { return base::data().begin_by_variant (variant); }
    const_iterator_by_variant   end_by_variant (variant_type variant) const
        { return base::data().  end_by_variant (variant); }

    const geo_basic<T,sequential>& get_background_geo() const; // code in geo_domain.h
          geo_basic<T,sequential>  get_background_domain() const;

// for compatibility with distributed interface:

    size_type ige2ios_dis_ige (size_type dim, size_type ige) const { return ige; }
    size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const { return dis_ige; }
    size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) const { return ios_ige; }

// comparator:

    bool operator== (const geo_basic<T,sequential>& omega2) const { return base::data().operator== (omega2.data()); }

// i/o:

    idiststream& get (idiststream& ips);
    odiststream& put (odiststream& ops) const;
    void save (std::string filename = "") const;
    void dump (std::string name) const {        base::data().dump (name); }
    bool check (bool verbose = true) const { return base::data().check(verbose); }
};

template <class T>
class geo_basic<T,distributed> : public smart_pointer_clone<geo_abstract_rep<T,distributed> > {
public:

// typedefs:

    typedef distributed                             memory_type;
    typedef geo_abstract_rep<T,distributed>         rep;
    typedef geo_rep<T,distributed>                  rep_geo_rep;
    typedef smart_pointer_clone<rep>                base;
    typedef typename rep::size_type                 size_type;
    typedef typename rep::node_type                 node_type;
    typedef typename rep::variant_type              variant_type;
    typedef typename rep::node_map_type             node_map_type;
    typedef typename rep::reference                 reference;
    typedef typename rep::const_reference           const_reference;
    typedef typename rep::iterator                  iterator;
    typedef typename rep::const_iterator            const_iterator;
    typedef typename rep::iterator_by_variant       iterator_by_variant;
    typedef typename rep::const_iterator_by_variant const_iterator_by_variant;
    typedef typename rep::coordinate_type           coordinate_type;

// allocators:

    geo_basic ();
    geo_basic (std::string name, const communicator& comm = communicator());
    void load (std::string name, const communicator& comm = communicator());
    geo_basic (const domain_indirect_basic<distributed>& dom, const geo_basic<T,distributed>& omega);

    // build from_list (for level set)
    geo_basic (
      const geo_basic<T,distributed>&                     lambda,
      const array<point_basic<T>,distributed>&                   node_list,
      const boost::array<array<geo_element_auto<heap_allocator<size_type> >,distributed>,
                         reference_element::max_variant>& elt_list)
    : base (new_macro(rep_geo_rep(lambda,node_list,elt_list))) {}

// accessors:

    std::string                    name() const { return base::data().name(); }
    std::string              familyname() const { return base::data().familyname(); }
    size_type                 dimension() const { return base::data().dimension(); }
    size_type             map_dimension() const { return base::data().map_dimension(); }
    size_type             serial_number() const { return base::data().serial_number(); }
    size_type                   variant() const { return base::data().variant(); }
    coordinate_type   coordinate_system() const { return base::data().coordinate_system(); }
    std::string  coordinate_system_name() const { return space_constant::coordinate_system_name(coordinate_system()); }
    const basis_basic<T>& get_piola_basis() const { return base::data().get_piola_basis(); }
    size_type                     order() const { return base::data().get_piola_basis().degree(); }
    const node_type&               xmin() const { return base::data().xmin(); }
    const node_type&               xmax() const { return base::data().xmax(); }
    const distributor& geo_element_ownership(size_type dim) const
                        { return base::data().geo_element_ownership (dim); }
    const geo_size&      sizes()             const { return base::data().sizes(); }
    const geo_size&  ios_sizes()             const { return base::data().ios_sizes(); }
    const_reference get_geo_element (size_type dim, size_type ige) const
                { return base::data().get_geo_element (dim, ige); }
    const_reference dis_get_geo_element (size_type dim, size_type dis_ige) const
                { return base::data().dis_get_geo_element (dim, dis_ige); }
    const geo_element& bgd2dom_geo_element (const geo_element& bgd_K) const
                { return base::data().bgd2dom_geo_element (bgd_K); }
    const geo_element& dom2bgd_geo_element (const geo_element& dom_K) const
                { return base::data().dom2bgd_geo_element (dom_K); }
    size_type neighbour (size_type ie, size_type loc_isid) const {
                          return base::data().neighbour (ie, loc_isid); }
    void neighbour_guard() const { base::data().neighbour_guard(); }
    distributor geo_element_ios_ownership (size_type dim) const {
        return base::data().geo_element_ios_ownership (dim); }
    size_type ige2ios_dis_ige (size_type dim, size_type ige) const {
        return base::data().ige2ios_dis_ige (dim,ige); }
    size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const {
        return base::data().dis_ige2ios_dis_ige (dim,dis_ige); }
    size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) const {
        return base::data().ios_ige2dis_ige (dim, ios_ige); }
    size_type        n_node() const { return base::data().n_node(); }
    const node_type&     node(size_type     inod) const { return base::data().node(inod); }
    const node_type& dis_node(size_type dis_inod) const { return base::data().dis_node(dis_inod); }
    void dis_inod (const geo_element& K, std::vector<size_type>& dis_inod) const {
                return base::data().dis_inod(K,dis_inod); }
    node_type piola (const geo_element& K, const node_type& hat_x) const { return base::data().piola (K, hat_x); }
    const array<node_type,distributed>& get_nodes() const { return base::data().get_nodes(); }
    void set_nodes (const array<node_type,distributed>& x);
    void reset_order (size_type order);
    size_type dis_inod2dis_iv (size_type dis_inod) const { return base::data().dis_inod2dis_iv(dis_inod); }
    void set_coordinate_system (coordinate_type sys_coord);
    void set_coordinate_system (std::string sys_coord_name) { set_coordinate_system (space_constant::coordinate_system(sys_coord_name)); }
    void set_dimension (size_type dim);
    void set_serial_number (size_type i);
    void set_name (std::string name);

    size_type n_domain_indirect () const { return base::data().n_domain_indirect (); }
    bool have_domain_indirect (const std::string& name) const { return base::data().have_domain_indirect (name); }
    const domain_indirect_basic<distributed>& get_domain_indirect (size_type i) const {
          return base::data().get_domain_indirect (i); }
    const domain_indirect_basic<distributed>& get_domain_indirect (const std::string& name) const {
          return base::data().get_domain_indirect (name); }
    void  insert_domain_indirect (const domain_indirect_basic<distributed>& dom) const {
          base::data().insert_domain_indirect (dom); }

    size_type n_domain () const { return base::data().n_domain_indirect (); }
    geo_basic<T,distributed> get_domain (size_type i) const;
    geo_basic<T,distributed> operator[] (const std::string& name) const;
    geo_basic<T,distributed> boundary() const;
    geo_basic<T,distributed> internal_sides() const;
    geo_basic<T,distributed> sides() const;

    size_type seq_locate (
                const point_basic<T>& x,
                size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
                { return base::data().seq_locate (x, dis_ie_guest); }
    size_type dis_locate (
                const point_basic<T>& x,
                size_type dis_ie_guest = std::numeric_limits<size_type>::max()) const
                { return base::data().dis_locate (x, dis_ie_guest); }
    void locate (const array<point_basic<T>, distributed>& x, array<size_type, distributed>& dis_ie) const
                { return base::data().locate (x, dis_ie); }
    size_type seq_trace_move (
                const point_basic<T>&     x,
                const point_basic<T>&     v,
                      point_basic<T>&     y) const
                                        { return base::data().seq_trace_move (x,v,y); }
    size_type dis_trace_move (
                const point_basic<T>&     x,
                const point_basic<T>&     v,
                      point_basic<T>&     y) const
                                        { return base::data().dis_trace_move (x,v,y); }
    void trace_ray_boundary (
                const array<point_basic<T>,distributed>&     x,
                const array<point_basic<T>,distributed>&     v,
                      array<size_type, distributed>&         dis_ie,
                      array<point_basic<T>,distributed>&     y) const
                                        { return base::data().trace_ray_boundary (x,v,dis_ie,y); }
    void trace_move (
                const array<point_basic<T>,distributed>&     x,
                const array<point_basic<T>,distributed>&     v,
                      array<size_type, distributed>&         dis_ie,
                      array<point_basic<T>,distributed>&     y) const
                                        { return base::data().trace_move (x,v,dis_ie,y); }

// extended accessors:

    size_type     size(size_type dim) const { return base::data().geo_element_ownership(dim).size(); }
    size_type dis_size(size_type dim) const { return base::data().geo_element_ownership(dim).dis_size(); }
    const communicator& comm()        const { return geo_element_ownership (0).comm(); }
    size_type     size()              const { return size     (map_dimension()); }
    size_type dis_size()              const { return dis_size (map_dimension()); }
    size_type     n_vertex()          const { return size     (0); }
    const_reference operator[] (size_type ie) const
                { return get_geo_element (map_dimension(), ie); }

    const_iterator begin (size_type dim) const { return base::data().begin(dim); }
    const_iterator end   (size_type dim) const { return base::data().end  (dim); }
    const_iterator begin ()              const { return begin(map_dimension()); }
    const_iterator end   ()              const { return end  (map_dimension()); }

    const_iterator_by_variant begin_by_variant (variant_type variant) const
        { return base::data().begin_by_variant (variant); }
    const_iterator_by_variant   end_by_variant (variant_type variant) const
        { return base::data().  end_by_variant (variant); }

    const geo_basic<T,distributed>& get_background_geo() const; // code in geo_domain.h
          geo_basic<T,distributed>  get_background_domain() const;

// comparator:

    bool operator== (const geo_basic<T,distributed>& omega2) const { return base::data().operator== (omega2.data()); }

// i/o:

    odiststream& put (odiststream& ops) const { return base::data().put (ops); }
    idiststream& get (idiststream& ips);
    void save (std::string filename = "") const;
    bool check (bool verbose = true) const { return base::data().check(verbose); }

// utilities:

    void set_ios_permutation (
        boost::array<size_type,reference_element::max_variant>& loc_ndof_by_variant,
        array<size_type,distributed>&                           idof2ios_dis_idof) const
     { base::data().set_ios_permutation (loc_ndof_by_variant, idof2ios_dis_idof); }
};