syco (1e)

Draw synonymous codon usage statistic plot for a nucleotide sequence

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  4. syco: Draw synonymous codon usage statistic plot for a nucleotide sequence
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  4. syco: Draw synonymous codon usage statistic plot for a nucleotide sequence

SYNOPSIS

syco -sequence sequence -cfile codon -window integer -uncommon boolean -minimum float -plot toggle -graph xygraph -outfile outfile syco -help

DESCRIPTION

syco is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Codon usage,Nucleic:Gene finding" command group(s).

OPTIONS

Input section

-sequence sequence

-cfile codon

Codon usage file

Advanced section

-window integer

Default value: 30

-uncommon boolean

Default value: N

-minimum float

Default value: .15

Output section

-plot toggle

Default value: Y

-graph xygraph

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

RELATED TO syco…

syco is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.