showorf (1e)

Display a nucleotide sequence and translation in pretty format

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  4. showorf: Display a nucleotide sequence and translation in pretty format
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  4. showorf: Display a nucleotide sequence and translation in pretty format

SYNOPSIS

showorf -sequence sequence -frames list [-table list] -outfile outfile [-ruler boolean] [-plabel boolean] [-nlabel boolean] -width integer showorf -help

DESCRIPTION

showorf is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Gene finding,Nucleic:Translation" command group(s).

OPTIONS

Input section

-sequence sequence

Required section

-frames list

Default value: 1,2,3,4,5,6

Additional section

-table list

Output section

-outfile outfile

-ruler boolean

Default value: Y

-plabel boolean

Default value: Y

-nlabel boolean

Default value: Y

-width integer

Default value: 50

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

RELATED TO showorf…

showorf is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.