showdb (1e)

showdb [-database string] [-html boolean] [-protein boolean] [-nucleic boolean] [-sequence boolean] [-feature boolean] [-text boolean] [-taxonomy boolean] [-resource boolean] [-assembly boolean] [-obo boolean] [-full boolean] [-methods boolean] [-fields boolean] [-defined boolean] [-release boolean] -only toggle -heading boolean -type boolean -id boolean -query boolean -all boolean -comment boolean [-outfile outfile] showdb -help

showdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Data resources" command group(s).

Input section

-database string

Additional section

-html boolean

Default value: N

-protein boolean

Default value: Y

-nucleic boolean

Default value: Y

-sequence boolean

Default value: Y

-feature boolean

Default value: Y

-text boolean

Default value: Y

-taxonomy boolean

Default value: Y

-resource boolean

Default value: Y

-assembly boolean

Default value: Y

-obo boolean

Default value: Y

-full boolean

Default value: N

-methods boolean

This displays the access methods that can be used on this database, for all, query or ID access Default value: $(full)

-fields boolean

This displays the search fields that can be used on this database, other than the standard 'id' or 'acc' fields. Default value: $(full)

-defined boolean

This displays a short name for the file containing the database definition Default value: $(full)

-release boolean

Default value: $(full)

Advanced section

-only toggle

This is a way of shortening the command line if you only want a few standard columns to be displayed. Instead of specifying: '-nohead -notype -noid -noquery -noall' to get only the comment output, you can specify '-only -comment' Default value: N

-heading boolean

Default value: @(!$(only))

-type boolean

Default value: @(!$(only))

-id boolean

Default value: @(!$(only))

-query boolean

Default value: @(!$(only))

-all boolean

Default value: @(!$(only))

-comment boolean

Default value: @(!$(only))

Output section

-outfile outfile

Default value: stdout

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

showdb is fully documented via the tfm(1) system.

Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.