nps2gps (1)

nps2gps [\|-\|] [\|-D\|] [\|-F\|] [\|-G str\|] [\|-L\|] [\|-N\|] [\|-P\|] [\|-Q\|] [\|-R\|] [\|-T\|] [\|-U\|] [\|-f str\|] [\|-i filename\|] [\|-o filename\|] [\|-p path\|] [\|-r path\|] [\|-x str\|]

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

A summary of options is included below.

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Print usage message

-D

RefSeq mRNA Titles

-F

Map by Feature ID

-G str

General ID database name

-L

Lock components in advance

-N

Promote Non-coding RNAs

-P

mRNA ID from Protein

-Q

Special mRNA titles

-R

Enable Remote fetching from ID

-T

Map by Transcript ID

-U

Remove Unnecessary gene cross-references

-f str

Substring filter

-i filename

Single input file (default = stdin)

-o filename

Single output file (default = stdout)

-p path

Path to files for batch conversion

-r path

Path for results of batch conversion

-x str

File selection suffix for batch conversion (default = .ent)

The National Center for Biotechnology Information.

asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).