newcpgreport (1e)

Identify cpg islands in nucleotide sequence(s)

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  4. newcpgreport: Identify cpg islands in nucleotide sequence(s)

SYNOPSIS

newcpgreport -sequence seqall -window integer -shift integer -minlen integer -minoe float -minpc float -outfile outfile newcpgreport -help

DESCRIPTION

newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-window integer

Default value: 100

-shift integer

Default value: 1

-minlen integer

Default value: 200

-minoe float

Default value: 0.6

-minpc float

Default value: 50.

Output section

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

RELATED TO newcpgreport…

newcpgreport is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.