Local multiple alignment of sequences
edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection] [-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer [-itscore boolean] [-threshold float] -mask boolean -dostars boolean -starnum integer -outfile outfile -outseq seqoutall edialign -help
edialign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Multiple" command group(s).
-sequences seqset
-nucmode list
Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n
-revcomp boolean
Default value: N
-overlapw selection
By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or 'no' Default value: default (when Nseq =< 35)
-linkage list
Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum linkage) Default value: UPGMA
-maxfragl integer
Default value: 40
-fragmat boolean
Default value: N
-fragsim integer
Default value: 4
-itscore boolean
Default value: N
-threshold float
Default value: 0.0
-mask boolean
Default value: N
-dostars boolean
Default value: N
-starnum integer
Default value: 4
-outfile outfile
-outseq seqoutall
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
edialign is fully documented via the tfm(1) system.
Debian Med Packaging Team <[email protected]>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.