edamclean (1e)

Validate and fix edam obo ontology

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  4. edamclean: Validate and fix edam obo ontology

SYNOPSIS

edamclean -edaminfile infile -taxdirectory directory -mode selection -edamoutfile outfile -logfile outfile -xmlfile outfile -xmloutdir outdir edamclean -help

DESCRIPTION

edamclean is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Ontology:EDAM" command group(s).

OPTIONS

Input section

-edaminfile infile

Default value: /homes/jison/edam/EDAM.obo

-taxdirectory directory

Required section

-mode selection

Default value: Report only

Advanced section

Output section

-edamoutfile outfile

Default value: EDAM_out.obo

-logfile outfile

Default value: EDAM_out.log

-xmlfile outfile

Default value: EDAM_out.xml

-xmloutdir outdir

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

RELATED TO edamclean…

edamclean is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <[email protected]>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.